The Zee Cine Award Best Story is a technical award.
The winners are listed below:-
| Year | Winner (s) | Film |
|---|---|---|
| 2007 | Rajkumar Hirani & Abhijat Joshi | Lage Raho Munna Bhai |
| 2008 | Amole Gupte | Taare Zameen Par (Like Stars on Earth) |
| 2011 | Karan Johar | My Name is Khan |